Create, run, monitor, and kill pipelines Create $ gcloud alpha genomics pipelines create --pipeline-json-file PIPELINE-FILE.json --pipeline-json-file samtools_index.json Created samtools index, id: PIPELINE-ID Run $ gcloud alpha genomics pipelines run --pipeline_id PIPELINE-ID \ --logging gs://YOUR-BUCKET/YOUR-DIRECTORY/logs \ --inputs inputFile=gs://genomics-public-data/gatk-examples/example1/NA12878_chr22.bam \ --outputs outputFile=gs://YOUR-BUCKET/YOUR-DIRECTORY/output/NA12878_chr22.bam.bai Running: operations/OPERATION-ID Status $ gcloud alpha genomics operations describe OPERATION-ID Kill $ gcloud alpha genomics operations cancel OPERATION-ID